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1

Open-Source Sequence Clustering Methods Improve the State Of the Art

Kopylova, Evguenia, Navas-Molina, Jose A., Mercier, Céline, Xu, Zhenjiang Zech, Mahé, Frédéric, He, Yan, Zhou, Hong-Wei, Rognes, Torbjørn, Caporaso, J. Gregory, Knight, Rob, Segata, Nicola

Journal:

Year:

2016

Language:

english

File:

PDF, 5.65 MB

english, 2016

2

Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation

Torbjørn Rognes

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 624 KB

english, 2011

3

A new protein superfamily includes two novel 3-methyladenine DNA glycosylases from Bacillus cereus, AlkC and AlkD

Ingrun Alseth, Torbjørn Rognes, Toril Lindbäck, Inger Solberg, Kristin Robertsen, Knut Ivan Kristiansen, Davide Mainieri, Lucy Lillehagen, Anne-Brit Kolstø, Magnar Bjørås

Journal:

Molecular Microbiology

Year:

2006

Language:

english

File:

PDF, 122 KB

english, 2006

4

Genome dynamics in major bacterial pathogens

Ole Herman Ambur, Tonje Davidsen, Stephan A. Frye, Seetha V. Balasingham, Karin Lagesen, Torbjørn Rognes, Tone Tønjum

Journal:

FEMS Microbiology Reviews

Year:

2009

Language:

english

File:

PDF, 497 KB

english, 2009

5

Schizosaccharomyces pombe encodes a mutated AP endonuclease 1

Jon K. Laerdahl, Hanne Korvald, Line Nilsen, Kristin Dahl-Michelsen, Torbjørn Rognes, Magnar Bjørås, Ingrun Alseth

Journal:

Year:

2011

Language:

english

File:

PDF, 1.17 MB

english, 2011

6

The ada operon of Mycobacterium tuberculosis encodes two DNA methyltransferases for inducible repair of DNA alkylation damage

Mingyi Yang, Randi M. Aamodt, Bjørn Dalhus, Seetha Balasingham, Ina Helle, Pernille Andersen, Tone Tønjum, Ingrun Alseth, Torbjørn Rognes, Magnar Bjørås

Journal:

Year:

2011

Language:

english

File:

PDF, 608 KB

english, 2011

7

Large-scale inference of the point mutational spectrum in human segmental duplications

Sigve Nakken, Einar A Rødland, Torbjørn Rognes, Eivind Hovig

Journal:

Year:

2009

Language:

english

File:

PDF, 623 KB

english, 2009

8

Cell-cycle regulation, intracellular sorting and induced overexpression of the human NTH1 DNA glycosylase involved in removal of formamidopyrimidine residues from DNA

Luisa Luna, Magnar Bjørås, Elsebeth Hoff, Torbjørn Rognes, Erling Seeberg

Journal:

Mutation Research/DNA Repair

Year:

2000

Language:

english

File:

PDF, 361 KB

english, 2000

9

DNA repair by bacterial AlkB proteins

Pål Ø. Falnes, Torbjørn Rognes

Journal:

Research in Microbiology

Year:

2003

Language:

english

File:

PDF, 539 KB

english, 2003

10

A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis

Rolf I Skotheim, Gard OS Thomassen, Marthe Eken, Guro E Lind, Francesca Micci, Franclim R Ribeiro, Nuno Cerveira, Manuel R Teixeira, Sverre Heim, Torbjørn Rognes, Ragnhild A Lothe

Journal:

Molecular Cancer

Year:

2009

Language:

english

File:

PDF, 865 KB

english, 2009

11

ALKBH1 is a Histone H2A Dioxygenase Involved in Neural Differentiation

Ougland, Rune, Lando, David, Jonson, Ida, Dahl, John A., Moen, Marivi Nabong, Nordstrand, Line M., Rognes, Torbjørn, Lee, Jeannie T., Klungland, Arne, Kouzarides, Tony, Larsen, Elisabeth

Journal:

Year:

2012

Language:

english

File:

PDF, 958 KB

english, 2012

12

A new family of proteins related to the HEAT-like repeat DNA glycosylases with affinity for branched DNA structures

Backe, Paul H., Simm, Roger, Laerdahl, Jon K., Dalhus, Bjørn, Fagerlund, Annette, Økstad, Ole A., Rognes, Torbjørn, Alseth, Ingrun, Kolstø, Anne-Brit, Bjørås, Magnar

Journal:

Journal of Structural Biology

Year:

2013

Language:

english

File:

PDF, 2.06 MB

english, 2013

13

Non-homologous functions of the AlkB homologs

Ougland, Rune, Rognes, Torbjørn, Klungland, Arne, Larsen, Elisabeth

Journal:

Journal of Molecular Cell Biology

Year:

2015

Language:

english

File:

PDF, 937 KB

english, 2015

14

Computational Prediction of MicroRNAs Encoded in Viral and Other Genomes

Thomassen, Gard O. S., Røsok, Øystein, Rognes, Torbjørn

Journal:

Journal of Biomedicine and Biotechnology

Year:

2006

Language:

english

File:

PDF, 816 KB

english, 2006

15

Single Transmembrane Peptide DinQ Modulates Membrane-Dependent Activities

Weel-Sneve, Ragnhild, Kristiansen, Knut Ivan, Odsbu, Ingvild, Dalhus, Bjørn, Booth, James, Rognes, Torbjørn, Skarstad, Kirsten, Bjørås, Magnar, Herman, Christophe

Journal:

Year:

2013

Language:

english

File:

PDF, 1.67 MB

english, 2013

16

Continuous and Periodic Expansion of CAG Repeats in Huntington's Disease R6/1 Mice

Møllersen, Linda, Rowe, Alexander D., Larsen, Elisabeth, Rognes, Torbjørn, Klungland, Arne, MacDonald, Marcy E.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.06 MB

english, 2010

17

cnvScan: a CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data

Samarakoon, Pubudu Saneth, Sorte, Hanne Sørmo, Stray-Pedersen, Asbjørg, Rødningen, Olaug Kristin, Rognes, Torbjørn, Lyle, Robert

Journal:

Year:

2016

Language:

english

File:

PDF, 1.07 MB

english, 2016

18

The Saccharomyces cerevisiae Homologues of Endonuclease III from Escherichia coli , Ntg1 and Ntg2, Are Both Required for Efficient Repair of Spontaneous and Induced Oxidative DNA Damage in Yeast

Alseth, Ingrun, Eide, Lars, Pirovano, Manuela, Rognes, Torbjørn, Seeberg, Erling, Bjørås, Magnar

Journal:

Molecular and Cellular Biology

Year:

1999

Language:

english

File:

PDF, 1.86 MB

english, 1999

19

The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress

Namouchi, Amine, Gómez-Muñoz, Marta, Frye, Stephan A., Moen, Line Victoria, Rognes, Torbjørn, Tønjum, Tone, Balasingham, Seetha V.

Journal:

Year:

2016

Language:

english

File:

PDF, 3.67 MB

english, 2016

20

Transcriptome analysis of human OXR1 depleted cells reveals its role in regulating the p53 signaling pathway

Yang, Mingyi, Lin, Xiaolin, Rowe, Alexander, Rognes, Torbjørn, Eide, Lars, Bjørås, Magnar

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

21

Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response

Booth, James A., Thomassen, Gard O. S., Rowe, Alexander D., Weel-Sneve, Ragnhild, Lagesen, Karin, Kristiansen, Knut I., Bjørås, Magnar, Rognes, Torbjørn, Lindvall, Jessica M.

Journal:

Scientific Reports

Year:

2013

Language:

english

File:

PDF, 445 KB

english, 2013

22

NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences

Khelik, Ksenia, Lagesen, Karin, Sandve, Geir Kjetil, Rognes, Torbjørn, Nederbragt, Alexander Johan

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.43 MB

english, 2017

23

Custom Design and Analysis of High-Density Oligonucleotide Bacterial Tiling Microarrays

Thomassen, Gard O. S., Rowe, Alexander D., Lagesen, Karin, Lindvall, Jessica M., Rognes, Torbjørn, Kelso, Janet

Journal:

Year:

2009

Language:

english

File:

PDF, 547 KB

english, 2009

24

Normalization of RNA-Sequencing Data from Samples with Varying mRNA Levels

Aanes, Håvard, Winata, Cecilia, Moen, Lars F., Østrup, Olga, Mathavan, Sinnakaruppan, Collas, Philippe, Rognes, Torbjørn, Aleström, Peter, Dupuy, Denis

Journal:

Year:

2014

Language:

english

File:

PDF, 546 KB

english, 2014

25

Swarm: robust and fast clustering method for amplicon-based studies

Mahé, Frédéric, Rognes, Torbjørn, Quince, Christopher, de Vargas, Colomban, Dunthorn, Micah

Journal:

Year:

2014

Language:

english

File:

PDF, 408 KB

english, 2014

26

Swarm v2: highly-scalable and high-resolution amplicon clustering

Mahé, Frédéric, Rognes, Torbjørn, Quince, Christopher, de Vargas, Colomban, Dunthorn, Micah

Journal:

Year:

2015

Language:

english

File:

PDF, 508 KB

english, 2015

27

A Two-tiered compensatory response to loss of DNA repair modulates aging and stress response pathways

Fensgård, Øyvind, Kassahun, Henok, Bombik, Izabela, Rognes, Torbjørn, Lindvall, Jessica Margareta, Nilsen, Hilde

Journal:

Year:

2010

Language:

english

File:

PDF, 1.38 MB

english, 2010